Supported formats

Tabular formats

Extension	Description	Source
.txt	Plain text	Core
.csv	Comma-separated values	Core
.tsv	Tab-separated values	Core
.xml	Extensible Markup Language	Core
.json	JavaScript Object Notation	Core
.HTML	HyperText Markup Language	Core
.xlsx	Excel	Core
.edf	European Data Format	Core
.sas7bdat	SAS database file	Core
.kml, .kmz	Keyhole Markup Language (geographic annotations)	GIS
.kxl	KeyCreator eXtensible Language	Core
.rds, .rda	R Data Format	Core
.h5	Hierarchical Data Format	Core
.nc	NetCDF	Core
.mat	MATLAB MAT	Core
.d42	Datagrok project	Core
.zip	ZIP archive (for supported types)	Core
.gz, .gzip	gzip	Core
.tar	Tape archive	Core
.ipynb	Jupyter Notebook	Core
netCDF	network Common Data Form	Core

Molecule structure formats

Extension	Description	Source
.sdf	Structure-data file	Chem
.mol	MDL Molfile	Chem
.mol2	SYBYL molecule representation	Chem

Molecule3D structure formats

Extension	Description	Source	Viewer
.brix	(preview) Electron Density Map	BiostructureViewer
.ccp4	Collaborative Computational Project Number 4 electron density	BiostructureViewer	NGL
.cif	(preview) Crystallographic Information File	BiostructureViewer
.cifCore	Crystallographic Information Core File	BiostructureViewer	Biostructure
.cns	Density ?	BiostructureViewer	NGL
.cub	(preview) Orbital/Density Values on a 3D Grid	BiostructureViewer
.cube	(preview) Orbital/Density Values on a 3D Grid	BiostructureViewer
.dsn6	(preview) Ribbons FRODO Map	BiostructureViewer
.dx	(preview) Chemical Spectroscopy Format	BiostructureViewer
.dxbin	(preview) .dxbin	BiostructureViewer
.ent	(preview) Brookhaven PDB Molecule	BiostructureViewer
.gro	GROMACS	BiostructureViewer	Biostructure
.mcif	(preview) Macromolecular Crystallographic Information File	BiostructureViewer
.mmCif	Macromolecular Crystallographic Information File	BiostructureViewer	Biostructure
.mmtf	Macromolecular Transmission Format	BiostructureViewer	NGL
.mrc	(preview) Electron Density Map	BiostructureViewer
.obj	Wavefront .obj file	BiostructureViewer	NGL
.parm7	(preview) AMBER Parameter/Topology File	BiostructureViewer
.pdb	Protein Data Bank	BiostructureViewer	Biostructure
.pdbqt	Protein Data Bank, Partial Charge (Q), & Atom Type (T)	BiostructureViewer	Biostructure
.ply	Polygon file format	BiostructureViewer	NGL
.psf	(preview) Protein Structure File	BiostructureViewer
.sd	(preview) Structure-Data	BiostructureViewer
.prmtop	Parameter / Topology (AMBER)	BiostructureViewer	NGL
.top	Gromacs Topology File	BiostructureViewer	NGL
.xplor	(preview) Electron Density Map	BiostructureViewer
.xyz	(preview) Cartesian Coordinates Format	BiostructureViewer

Macromolecule formats

Extension	Description	Source
.fasta	FASTA format (fa, fna, ffn, faa, frn, fa, fst)	[Bio]

Note: The platform detector will also be able to recognize the semantic type of Macromolecule in files that are in Tabular format.

See also: