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Sequence Translator changelog

1.10.24 (2026-05-19)​

  • Removed redundant demos

1.10.23 (2026-05-15)​

  • OligoNucleotide renderer: adaptive chip sizing (no hard max cap), 10px vertical breathing room, base-pair indicators (G-C 3 lines, A-U/A-T 2 lines, mismatches dashed), size-proportional chip corners.
  • OligoNucleotide cell: double-click opens a full-screen canvas viewer with hover tooltips; HELM editing moved to a separate "Edit HELM" action alongside "Copy as HELM" and "Copy as Image".
  • WK lines between matching bases.

1.10.22 (2026-05-15)​

  • OligoNucleotide renderer: strand-oriented redesign — sugar stripes on the outside edge of each strand, linkages as rounded apex arches; all colors sourced from the Bio monomer library.
  • OligoNucleotide renderer: fixed reversed-antisense linkage placement (was shifted by one gap and dropping the leftmost-data linkage).
  • Speedup canonicalization of Markush enumeration results.

1.10.21 (2026-05-14)​

  • Markush enumeration UI redesign, history and bug fixes

1.10.18 (2026-05-11)​

  • OligoNucleotide cell renderer: Fixed bracketed monomer base parsing (e.g. [5Br-dC] inside (...)) so renderer/resolver pick up modification colors and structures correctly.
  • OligoNucleotide: Added double-click HELM Web Editor for OligoNucleotide cells; OK saves the edited HELM back to the cell

1.10.14 (2026-04-21)​

  • Chem Enumeration
  • Helm enumeration improvements, paralel mode
  • Polytool: support for custom notation back-conversion, fix for reversed rule order

1.10.5 (2025-12-11)​

  • PT-Synthetic: Fix missing molfile handler errors

1.10.3 (2025-11-03)​

  • Fix synthetic rule application for multiple instances when r group numbering is reversed

1.10.2 (2025-11-03)​

  • Update Bio Lib API
  • Fix synthetic rule errors for missing monomers
  • Fix incosistent R group conneections for reversed rule orders

1.9.5 (2025-05-02)​

  • Fix changing bond numbers when fixing molblocks

1.9.4 (2025-04-08)​

  • Linearization fix for polytool convert.

1.9.1 (2025-03-31)​

  • Combination of sequence sets dialog.

1.8.0 (2025-02-20)​

  • Support for enumeration in all notations
  • fallback for polytool convert
  • Corrected highlighting

1.6.5 (2024-12-01)​

New features​

  • PolyTool: highlight in mol based on given notation
  • PolyTool: Rule manager enhancements

Bug fixes​

  • PolyTool fix R3, R4 and elder groups capping

1.6.4 (2024-11-27)​

  • PolyTool: linearization of single sequence molecules
  • Enumerator: Added whole library enumeration

1.6.3 (2024-11-22)​

Moved Context menu items to detector

1.6.2 (2024-11-17)​

New features​

  • PolyTool rule manager enhancement
  • Sequence renderer font resizing

1.6.1 (2024-11-15)​

Bug fixes​

  • PolyTool fix default options
  • PolyTool fix explicit carbon cut

1.6.0 (2024-11-14)​

New features​

  • Add PolyTool work with sinthetic monomers

1.5.3 (2024-11-06)​

Bug fixes​

  • PolyTool fix rules empty specification (all monomers undergo)

1.5.2 (2024-11-06)​

Bug fixes​

  • PolyTool rules several instances bug fix

1.5.1 (2024-11-06)​

Bug fixes​

  • PolyTool rules fixes rule management
  • PolyTool rules fixes crash if monomer is absent

1.5.0 (2024-11-04)​

New features​

  • Add PolyTool interface for rule management

1.4.10 (2024-11-01)​

Bug fixes​

  • Fix build

1.4.9 (2024-10-31)​

Bug fixes​

  • Fix package initializing helmHelper
  • Fix Chain using HelmAtom.bio of type PtBio
  • Fix PT Enumerate dialog for harmonized sequences
  • Fix PT Enumerate for monomer hovering
  • Fix PT Enumerate for historical values
  • Fix PT Enumerate adding buildCyclizedMonomerHoverLink, WIP
  • Fix adding CyclizedGridCellRenderBack

1.4.8 (2024-10-25)​

Bug fixes​

  • PolyTool ambigous R groups handling bug

1.4.7 (2024-10-25)​

Bug fixes​

  • PolyTool ambigous R groups handling bug

1.4.6 (2024-10-25)​

New features​

  • Add PolyTool Enumerate for harmonized sequences
  • PolyTool ambigous R groups handling

Bug fixes​

  • Fix PolyTool chain, add check consistency, add tests
  • Fix PolyTool Convert tests
  • Fix the package init

1.4.5 (2024-10-11)​

Bug fixes​

  • Fix for grok.userSettings
  • Fix moving support custom notation harmonized sequence
  • Fix PT Convert for monomer highlighting
  • Fix PT Convert reaction monomer colors
  • Fix PT detectors adding tests
  • Bump dependencies versions

1.4.4 (2024-09-30)​

New features​

  • Add convert with reaction rules

Bug fixes​

  • Fix sample reaction rule and monomer order
  • Fix isolate PolyTool convert error on row
  • Fix adding test for Chain .fromNotation
  • Fix adding test toAtomicLevel getNewMonomer

1.4.3 (2024-09-27)​

Features​

  • Add PolyTool convert reverse

Bug fixes​

  • Add sample reaction rule aG + azG = GGaz, test data
  • Fix using MonomerLibHelper.loadMonomerLibForTests
  • Add test toAtomicLevel with overridden monomer lib
  • Fix PolyTool Enumerate for zero-based monomer position
  • Fix Chain.getHelm square brackets for multi char symbols

1.4.2 (2024-09-24)​

New features​

  • Add PolyTool breadth enumerator

1.4.1 (2024-09-12)​

Bug fixes​

  • Input style fixes

1.4.0 (2024-09-10)​

Features​

  • Add PolyTool Enumerator Chem dialog to context menu for Molecule

Bug fixes​

  • Fixes for PolyTool Enumerator Helm dialog
    • Trivial Name input Behavior
    • Enable for any Macromolecule cell
    • Example with monomers existing in default monomer lib
  • Fixes for datagrok-api changes
  • Add sample cyclized.csv for rules_examples.json
  • Fix PolyTool Convert, add tests cyclized
  • Fix PolyTool enumerate add progress indicator
  • Fixes for api changes
  • Fix PT dialogs destroy on build fail
  • Fix rules_examples for NH2-D with R3 and syclized sample
  • Fix polyToolConvert to work without table
  • Add tests for polyToolConvert, ui

1.3.14 (2024-09-02)​

Fix remove CyclizedNotationProvider

1.3.13 (2024-08-19)​

Features​

  • Improve PolyTool Enumerate Dialog
    • Add check and warning for substituting missed monomers
    • Add flag to keep the original molecule in the result
    • Add choice to select a molecule id and generate derivative

Bug fixes​

  • Fix PolyTool Enumerate dialog hanging on monomer click
  • Fix user settings for publish

1.3.12 (2024-08-16)​

PolyTool Enumerator Single and Matrix, dialog, tests

Bug fixes​

  • PolyTool Enumerator dialog grid input for placeholders, to atomic level option
  • PolyTool Enumerator dialog mouse interactivity, to atomic level, dialog size
  • PolyTool Enumerator dialog size and fit molecule input

1.3.11 (2024-07-31)​

Features​

  • Added chemical based enumerator

1.3.10 (2024-07-29)​

Features​

  • Add 'Create/Modified' date metadata to patterns

Bug fixes​

  • Load new patterns upon saving / overwriting

1.3.9 (2024-07-23)​

  • Dependency: datgarok-api >= 1.20.0

1.3.8 (2024-07-09)​

Features​

  • Add PolyTool-enumerate context menu for macromolecule cell

Bug fixes​

  • Use HelmInput from Helm
  • Bump dependencies versions

1.3.7 (2024-07-01)​

Bug fixes​

  • Fix style for colored text input

1.3.6 (2024-06-26)​

Bug fixes​

  • Fix bulk input in Pattern app

1.3.5 (2024-06-13)​

Features​

  • PolyTool Enumeration: cell with helm is added to the input

1.3.4 (2024-06-12)​

Bug fixes​

  • Fix terminal modification SVG rendering

1.3.3 (2024-06-12)​

Bug fixes​

  • Fix terminal modification SVG rendering

1.3.2 (2024-06-10)​

Features​

  • Add package MonomersPath package settings fallback to monomers-sample
  • Add README for monomers-sample
  • Add sample for bulk translation in Translator app

Bug fixes​

  • Fix tests for MonomersPath package settings

1.3.1 (2024-06-05)​

Bug fixes​

  • PolyTool: example data added to project

1.3.0 (2024-03-30)​

Features​

  • PolyTool: algorithm of conversion facilitated, json files are used as rules
  • PolyTool: enumeration feature (demo) added

1.2.9 (2024-03-30)​

Features​

  • #2707: Add original and canonical to monomer

1.2.7 (2024-01-29)​

Features​

  • Bulk translation for formats

1.2.6 (2024-01-29)​

Bug fixes​

  • Fixed column input in Pattern
  • Fixed whitespaces in molfiles

1.2.0 (2023-10-27)​

Features​

  • Tabs implemented as separate apps
  • Clear buttons added to sequence inputs

1.1.4 (2023-09-07)​

Bug fixes​

  • Fixed molfile direction for AS and AS2 on SDF tab

1.1.3 (2023-09-07)​

Bug fixes​

  • Fixed Direction of AS and AS2 for SDF tab

1.1.2 (2023-08-16)​

Bug fixes​

  • Fixed HELM generation for modifications

1.1.1 (2023-08-10)​

Features​

  • Updated dependencies

1.1.0 (2023-07-26)​

  • Dependency: datgarok-api >= 1.15.2

Features​

  • Option to add extra formats for translation in addition to Axolabs, BioSpring and MerMade12
  • Generation of HELM strings
  • Improved SMILES generation
  • UI/UX adjustments