Plugins
General
| Plugin | Area | Tag | Description | Release |
|---|---|---|---|---|
| Power Pack | Platform | Recommended | Commonly used platform enhancements | Stable |
| Tutorials | Resources | Recommended | App for learning Datagrok with interactive tutorials, Demo app | Stable |
Access
| Plugin | Area | Tag | Description | Release |
|---|---|---|---|---|
| SQLite | Data format | Optional | Support for SQLite | Stable |
| Arrow | Data format | Optional | Support for parquet and feather | Stable |
| File Editors | Data format | Optional | Support for PDF, DOCX | Stable |
| Alation | Misc | Optional | Integration with Alation (commercial 3rd party license) | Stable |
| Jira Connect | Jira | Optional | Integration with Jira | Stable |
Govern
| Plugin | Area | Tag | Description | Release |
|---|---|---|---|---|
| Usage Analysis | Usage analysis | Optional | App that monitors platform and plugins usage, event log (wiki) | Beta |
Visualize
| Plugin | Area | Tag | Description | Release |
|---|---|---|---|---|
| Power Grid | Spreadsheet | Recommended | Grid viewer enhancements | Stable |
| Charts | Viewers, misc | Optional | Visualizations based on external libraries (ECharts, D3.js, Circos, and three.js) | Stable |
| Dendrogram | Trees | Fit-for-purpose | Dendrogram viewer | Stable |
| PhyloTree Viewer | Trees | Fit-for-purpose | PhylocanvasGL viewer | Stable |
| GIS | GIS | Fit-for-purpose | GIS (geographic information system) functionality, like maps and geocoding | Stable |
| Excalidraw | Diagrams | Fit-for-purpose | Enables working with diagrams and drawings in the .excalidraw format | Stable |
Compute
| Plugin | Area | Tag | Description | Release |
|---|---|---|---|---|
| Compute | General | Required | Provides analytical and UI blocks for scientific computing | Stable |
| Diff Studio | ODE Solver | Fit-for-purpose | An app for solving ordinary differential equations (ODE) | Stable |
Scripting
| Plugin | Area | Tag | Description | Release |
|---|---|---|---|---|
| Pyodide | Scripting | Optional | Enables running Python scripts in the browser | Stable |
Learn
| Plugin | Area | Tag | Description | Release |
|---|---|---|---|---|
| EDA | ML Toolkit | Required | ML toolkit: dimensionality reduction, multivariate analysis, supervised ML, ANOVA, etc. | Stable |
| Notebooks | Jupyter Notebooks | Optional | Integration with JupyterLab Notebooks | Stable |
| MLflow | MLflow models | Fit-for-purpose | Integrates MLflow models into the Datagrok platform | Beta |
Develop
| Plugin | Area | Tag | Description | Release |
|---|---|---|---|---|
| Dev Tools | DevTools | Recommended | Developer tools (TestManager, DevPanel, etc.) | Stable |
| API Samples | Resources | Recommended | Examples of Grok API | Stable |
Solutions
Chem
| Plugin | Area | Tag | Description | Release |
|---|---|---|---|---|
| Chem | General | Required | Cheminformatics support (wiki). Comes with OpenChemLib sketcher | Stable |
| Marvin | Sketchers | Optional | Integration with Marvin JS (commercial 3rd party license) | Stable |
| Ketcher Sketcher | Sketchers | Optional | Integration with Ketcher (Apache license, version 2.0) | Stable |
| Chem Draw Sketcher | Sketchers | Optional | Integration with ChemDraw (commercial 3rd party license) | Stable |
| ChEMBL | Database search | Recommended | ChEMBL database for on-premise deployment | Stable |
| DrugBank | Database search | Optional | Information on 11,300 drugs from DrugBank | Stable |
| ChEMBL API | Database search | Optional | Webservice integration: ChEMBL | Stable |
| PubChem | Database search | Optional | Webservice integration: PubChem | Stable |
| Chemspace | Database search | Optional | Webservice integration: Chemspace | Stable |
| SureChEMBL | Database search | Optional | Performs searches through a locally deployed SureChEMBL database | Beta |
| Docking | Virtual screening | Optional | Let's you batch screen libraries against AutoDock-prepared targets with interactive visualization | Stable |
| Hit Triage | Virtual screening Hit to lead | Fit-for-purpose | Apps for virtual screening (Hit Triage) and hit design (Hit Design) | Stable |
| Retrosynthesis | Synthetic planning | Optional | Creates retrosynthesis paths for the selected molecule, built on top of AiZynthFinder | Beta |
| CDD Vault Link | Registration system integration | Optional | Provides integration with CDD Vault registration system | Beta |
| Reinvent4 | Generative molecular design | Fit-for-purpose | Provides integration with the Reinvent4 molecular design tool | Beta |
| NMRium | Visualization | Fit-for-purpose | Visualization of NMR diagram | Stable |
| Spectra Viewer | Visualization | Fit-for-purpose | Preview of JDX format for various types of spectra, including IR, UV, Mass, HPLC, absorption and others | Stable |
Bio
| Plugin | Area | Tag | Description | Release |
|---|---|---|---|---|
| Bio | General | Required | Bioinformatics support (wiki) | Stable |
| HELM | Data format | Recommended | Support for HELM notation, HELM editor | Stable |
| Biostructure Viewer | Visualization | Recommended | Visualization of biological structures (wiki) | Stable |
| Dendrogram | Visualization | Fit-for-purpose | Dendrogram viewer | Stable |
| PhyloTree Viewer | Visualization | Fit-for-purpose | PhylocanvasGL viewer | Stable |
| Metabolic Graph | Visualization | Fit-for-purpose | Metabolic graph visualizations for pathway mapping and analysis | Stable |
| Peptides | SAR | Fit-for-purpose | App for sequence-activity relationship analysis for peptides (wiki) | Stable |
| Curves | Curve fitting | Fit-for-purpose | Support for fitted curves (like dose-response curves), including in-grid rendering, storing charts in cells, interactivity, and automatic fitting | Stable |
| Sequence Translator | Oligonucleotides | Fit-for-purpose | App that converts oligonucleotides into various formats | Stable |
| Oligo Batch Calculator | Oligonucleotides | Fit-for-purpose | App that calculates oligonucleotide properties | Beta |
| Admetica | ADMET | Optional | App that lets you evaluate ADMET properties | Stable |
| Docking | Docking | Optional | Integration with Autodock GPU that let's you run docking and analyze the results in Datagrok | Stable |
| BioNeMo | Protein structure prediction, docking | Fit-for-purpose | Integrates advanced models for protein structure prediction and molecular docking | Beta |
NLP
| Plugin | Area | Tag | Description | Release |
|---|---|---|---|---|
| NLP | NLP | Optional | Integration with AWS Translate, a neural machine translation service. Extends Datagrok with info panels for text files | Stable |
Digital health, clinical
| Plugin | Area | Tag | Description | Release |
|---|---|---|---|---|
| Clinical Case | Clinical data | Fit-for-purpose | App for analyzing clinical data in SDTM format | Demo |